ORGLIST: RE: Everybody Digest, Vol 18, Issue 14

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From: Ravi Orugunty (rorugunty$##$oragenics.com)
Date: Wed Feb 22 2006 - 13:28:16 EST


Hi guys,
i'm trying to protect the carboxy terminus of N(alloc)serine using either a
propargyl or benzyl group. does anybody know of any reliable procedures?
best regards
ravi

-----Original Message-----
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[mailto:everybody-bounces$##$orglist.net]On Behalf Of
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Sent: Wednesday, February 22, 2006 12:18 PM
To: everybody$##$orglist.net
Subject: Everybody Digest, Vol 18, Issue 14

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When replying, please edit your Subject line so it is more specific
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Today's Topics:

   1. Re: Synthetic Methods Wiki (Jonas Sundberg)
   2. Re: Synthetic Methods Wiki (Eugen Leitl)
   3. RE: Synthetic Methods Wiki (Kiessling, Dr Anthony J)
   4. A breakthrough in mechanism of concerted cycloadditions?
      (Sengen Sun)
   5. RE: Synthetic Methods Wiki (Clyde Davies)
   6. Re: Synthetic Methods Wiki (nigel$##$pierpoint.u-net.com)
   7. RE: Synthetic Methods Wiki (Clyde Davies)
   8. Is methylation in water possible? (Robert J. Panetta)

----------------------------------------------------------------------

Message: 1
Date: Tue, 21 Feb 2006 19:54:57 +0100
From: Jonas Sundberg <gussujon$##$student.gu.se>
Subject: Re: ORGLIST: Synthetic Methods Wiki
To: everybody$##$orglist.net
Message-ID: <43FB6201.5090103$##$student.gu.se>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Yes, that looks like a big problem.
But I think it will be hard to get traffic/active writers, as there seem
to be a lack of organic chemists that surf the web. Still I think it's
worth a try! It doesn't cost anything else than the time wasted setting
it up, and it could both be fun and educative. But I think we need more
than a wiki of organic synthesis. A think a general wiki about organic
chemistry with a special section dedicated to preparatory methods would
work better, and maybe run a forum too.

/Jonas

Eugen Leitl wrote:

>On Mon, Feb 20, 2006 at 06:46:45PM +0000, will jones wrote:
>
>
>
>>I've tried using that site before and also found it a bit thin. If you
>>
>>
>
>I see bigger problems here: http://www.syntheticpages.org/static/terms.php
>
>Copyright
>
> * SyntheticPages owns the copyright and any other rights to all
materials on this website
> * SyntheticPages authorises you to:
> o browse and download the material
> o print out the material for teaching or research activities,
provided that the copyright notice is included (Copyright SyntheticPages ) )
> * You are not authorised to:
> o alter the material in any way
> o reproduce or store any part of this web site in any other
public or private storage medium, electronic or otherwise, without written
permission from SyntheticPages.
>
>
>
>
>>could make the submission process easy, and somehow have the ability to
>>search by structure, then I guess you would be onto a winner.
>>
>>
>
>These are GIFs, so in order to be able to search the images would
>have to be reentered manually, and exported into a suitable format
>(SMILEs, InChI, SDF, etc.) for searching (in a pinch, obgrep would do).
>
>
>
>>If you could also put in a 'section of failed reactions, but should have
>>worked' then that would be awesome.
>>
>>
>
>
>

------------------------------

Message: 2
Date: Tue, 21 Feb 2006 20:08:07 +0100
From: Eugen Leitl <eugen$##$leitl.org>
Subject: Re: ORGLIST: Synthetic Methods Wiki
To: everybody$##$orglist.net
Message-ID: <20060221190807.GN5582$##$leitl.org>
Content-Type: text/plain; charset=iso-8859-1

On Tue, Feb 21, 2006 at 07:54:57PM +0100, Jonas Sundberg wrote:

> Yes, that looks like a big problem.

I wonder what the motivation behind this restrictive copyright
was. Do the operators of http://www.syntheticpages.org/ (I kept
looking for a contact address, but was unable to find any) eventually
intend to raise a profit from operating it?

> But I think it will be hard to get traffic/active writers, as there seem
> to be a lack of organic chemists that surf the web. Still I think it's
> worth a try! It doesn't cost anything else than the time wasted setting
> it up, and it could both be fun and educative. But I think we need more
> than a wiki of organic synthesis. A think a general wiki about organic
> chemistry with a special section dedicated to preparatory methods would
> work better, and maybe run a forum too.

I'm a chemist by training, currently work in cheminformatics, and
have several machines in the rack by way of hobby. Assuming people here
would contribute content, we can easily cook up something useful, and then
see
where it goes from there. There's plenty of such projects in biological
sciences (e.g. http://openwetware.org/wiki/Main_Page etc.), but I always
considered organic chemists to be a too conservative bunch.

Is there at all an interest here in such a project?

> /Jonas
>
> Eugen Leitl wrote:
>
> >On Mon, Feb 20, 2006 at 06:46:45PM +0000, will jones wrote:
> >
> >
> >
> >>I've tried using that site before and also found it a bit thin. If you
> >>
> >>
> >
> >I see bigger problems here:
http://www.syntheticpages.org/static/terms.php
> >
> >Copyright
> >
> > * SyntheticPages owns the copyright and any other rights to all
> > materials on this website
> > * SyntheticPages authorises you to:
> > o browse and download the material
> > o print out the material for teaching or research activities,
> > provided that the copyright notice is included (Copyright
> > SyntheticPages ) )
> > * You are not authorised to:
> > o alter the material in any way
> > o reproduce or store any part of this web site in any other
> > public or private storage medium, electronic or otherwise,
> > without written permission from SyntheticPages.
> >
> >
> >
> >
> >>could make the submission process easy, and somehow have the ability to
> >>search by structure, then I guess you would be onto a winner.
> >>
> >>
> >
> >These are GIFs, so in order to be able to search the images would
> >have to be reentered manually, and exported into a suitable format
> >(SMILEs, InChI, SDF, etc.) for searching (in a pinch, obgrep would do).
> >
> >
> >
> >>If you could also put in a 'section of failed reactions, but should have
> >>worked' then that would be awesome.
> >>
> >>
> >
> >
> >
>
> _______________________________________________
> ORGLIST - Organic Chemistry Mailing List
> Website / Archive / FAQ: http://www.orglist.net
> To post a message (TO EVERYBODY) send to everybody$##$orglist.net
> To unsubscribe, send to everybody-request$##$orglist.net the message:
> unsubscribe your_orglist_password your_address

--
Eugen* Leitl leitl http://leitl.org
______________________________________________________________
ICBM: 48.07100, 11.36820            http://www.ativel.com
8B29F6BE: 099D 78BA 2FD3 B014 B08A  7779 75B0 2443 8B29 F6BE

------------------------------

Message: 3 Date: Tue, 21 Feb 2006 17:26:22 -0500 From: "Kiessling, Dr Anthony J" <akiessli$##$mansfield.edu> Subject: RE: ORGLIST: Synthetic Methods Wiki To: "Eugen Leitl" <eugen$##$leitl.org>, <everybody$##$orglist.net> Message-ID: <BEBF113AABFE1940A2770CC58C611EC0307233$##$exchange01.facstaff.mansfield.edu>

Content-Type: text/plain; charset="us-ascii"

I guess I might be a little dense here but it seems to me that what you are looking for already exists, it's called a library. I took a look at the synthetic web site that was mentioned a few notes ago and thought it reminded me of Organic Synthesis's little brother, BUT it's not peer reviewed. As a synthetic organic chemist I would not trust this site as much as I would Organic Synthesis, or a procedure gleaned from J. Org. Chem. or any other ACS publication. ACS publications are already searchable on the web, yes I know it cost an annual due but it is there. As for the copyright issue, that is common and the ACS and other publication houses own copyright to all published procedures. As for more general knowledge, there are books published on practical organic chemistry (Larock, March, Carey & Sunberg, Shriner's qual text, etc.). Drying solvents was the first thing I learned to do when I arrived at grad school. As the old saying goes, '40 hours in the lab will save you an hour in the library'.

Dr. Kiessling Department of Chemistry Mansfield University 570-662-4546 akiessli$##$mansfield.edu http://faculty.mansfield.edu/akiessli/ -----Original Message----- From: everybody-bounces$##$orglist.net [mailto:everybody-bounces$##$orglist.net] On Behalf Of Eugen Leitl Sent: Tuesday, February 21, 2006 2:08 PM To: everybody$##$orglist.net Subject: Re: ORGLIST: Synthetic Methods Wiki

On Tue, Feb 21, 2006 at 07:54:57PM +0100, Jonas Sundberg wrote:

> Yes, that looks like a big problem.

I wonder what the motivation behind this restrictive copyright was. Do the operators of http://www.syntheticpages.org/ (I kept looking for a contact address, but was unable to find any) eventually intend to raise a profit from operating it?

> But I think it will be hard to get traffic/active writers, as there seem > to be a lack of organic chemists that surf the web. Still I think it's

> worth a try! It doesn't cost anything else than the time wasted setting > it up, and it could both be fun and educative. But I think we need more > than a wiki of organic synthesis. A think a general wiki about organic

> chemistry with a special section dedicated to preparatory methods would > work better, and maybe run a forum too.

I'm a chemist by training, currently work in cheminformatics, and have several machines in the rack by way of hobby. Assuming people here would contribute content, we can easily cook up something useful, and then see where it goes from there. There's plenty of such projects in biological sciences (e.g. http://openwetware.org/wiki/Main_Page etc.), but I always considered organic chemists to be a too conservative bunch.

Is there at all an interest here in such a project?

> /Jonas > > Eugen Leitl wrote: > > >On Mon, Feb 20, 2006 at 06:46:45PM +0000, will jones wrote: > > > > > > > >>I've tried using that site before and also found it a bit thin. If you > >> > >> > > > >I see bigger problems here: http://www.syntheticpages.org/static/terms.php > > > >Copyright > > > > * SyntheticPages owns the copyright and any other rights to all > > materials on this website > > * SyntheticPages authorises you to: > > o browse and download the material > > o print out the material for teaching or research activities, > > provided that the copyright notice is included (Copyright > > SyntheticPages (c) ) > > * You are not authorised to: > > o alter the material in any way > > o reproduce or store any part of this web site in any other > > public or private storage medium, electronic or otherwise, > > without written permission from SyntheticPages. > > > > > > > > > >>could make the submission process easy, and somehow have the ability to > >>search by structure, then I guess you would be onto a winner. > >> > >> > > > >These are GIFs, so in order to be able to search the images would > >have to be reentered manually, and exported into a suitable format > >(SMILEs, InChI, SDF, etc.) for searching (in a pinch, obgrep would do). > > > > > > > >>If you could also put in a 'section of failed reactions, but should have > >>worked' then that would be awesome. > >> > >> > > > > > > > > _______________________________________________ > ORGLIST - Organic Chemistry Mailing List > Website / Archive / FAQ: http://www.orglist.net > To post a message (TO EVERYBODY) send to everybody$##$orglist.net > To unsubscribe, send to everybody-request$##$orglist.net the message: > unsubscribe your_orglist_password your_address -- Eugen* Leitl leitl http://leitl.org ______________________________________________________________ ICBM: 48.07100, 11.36820 http://www.ativel.com 8B29F6BE: 099D 78BA 2FD3 B014 B08A 7779 75B0 2443 8B29 F6BE _______________________________________________ ORGLIST - Organic Chemistry Mailing List Website / Archive / FAQ: http://www.orglist.net To post a message (TO EVERYBODY) send to everybody$##$orglist.net To unsubscribe, send to everybody-request$##$orglist.net the message: unsubscribe your_orglist_password your_address

------------------------------

Message: 4 Date: Tue, 21 Feb 2006 14:16:08 -0800 (PST) From: Sengen Sun <sengensun$##$yahoo.com> Subject: ORGLIST: A breakthrough in mechanism of concerted cycloadditions? To: everybody$##$orglist.net Message-ID: <20060221221608.62705.qmail$##$web53706.mail.yahoo.com> Content-Type: text/plain; charset=iso-8859-1

Recently, I claimed that I have made a breakthrough in the fundamental understanding of concerted cycloadditions.

Now I have uploaded to the CCL site one of my papers and a ppt presentation I used twice in 2005 for two international symposiums. The paper was the first paper I posted in the Chemistry Preprint Server 5 years ago. Some people already have it.

http://server.ccl.net/cca/documents/ConcertedCycloadditons/

http://server.ccl.net/cca/documents/ConcertedCycloadditons_2/

My findings on the theoretical knowledge of concerted cycloadditions are based on such a "ridiculously" simple method that it may be simply ridiculous to some people. I evaluated some arbitrary colliding complexes and learned some new and very important knowledge that is valid in understanding the concerted pathway. I formulated some new and interesting concepts such as conjugation hindrances and easiness of electronic migration that decide organic chemical reactivity.

I invite every one to criticize my theory on a scientific basis. I invite you to defeat my sensational claims I made in the Conclusions of my ppt presentation. If I am convinced anything I made wrong, I will correct or withdraw it.

Thanks to every one.

Sengen

__________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com

------------------------------

Message: 5 Date: Wed, 22 Feb 2006 11:42:33 -0000 From: "Clyde Davies" <deadlyvices$##$hotmail.com> Subject: RE: ORGLIST: Synthetic Methods Wiki To: <everybody$##$orglist.net> Message-ID: <BAY107-DAV14D8CA7D37C98B893C2365B4FD0$##$phx.gbl> Content-Type: text/plain; charset="us-ascii"

I have to say that I do take issue with this standpoint. Firstly, I no longer work in chemistry research but I still maintain an interest so access to a library is a no-no as far as I am concerned. Secondly, not everything useful gets published, and not everything published is useful. I went through countless organic chemistry manuals trying to find out what the hell I was doing wrong in my tetracyanobenzene synthesis. Each manual said for me to dry my DMF using molecular sieves, which I did, and which had little effect (unknown to me). I got lucky once, evidently, but it wasn't until I spoke a couple of years later to a proper organic (not a physical chemist) who pointed out the flaw in my experimental methodology. In the meantime, I had developed my own very mild and effective but expensive synthesis of tetracyanobenzene which was ALSO not published because it was part of a larger piece of work which ended up being pretty bloody pointless.

As regards provenance, the syntheses in Organic Syntheses *are* checked, but these are in the minority. How many times do we read in the literature of 'an improved/procedure/method for synthesis of...'? It's been quite evident that the authors of such papers are disappointed by the discrepancy between reported yields and their own actual ones. I am proposing that such a site would *compliment* and not *replace* the peer-reviewed method of publishing. Besides, if you don't like what you read, you can change it. That's the beauty of this particular publishing mindset, and one of the reasons why Wikipedia is successful *and* reliable. If this resource can prevent *one* grad student going through the hell that I went through trying to prepare one compound then I think it worth the risk.

Dr. Clyde Davies

-----Original Message----- From: everybody-bounces$##$orglist.net [mailto:everybody-bounces$##$orglist.net] On Behalf Of Kiessling, Dr Anthony J Sent: 21 February 2006 22:26 To: Eugen Leitl; everybody$##$orglist.net Subject: RE: ORGLIST: Synthetic Methods Wiki

I guess I might be a little dense here but it seems to me that what you are looking for already exists, it's called a library. I took a look at the synthetic web site that was mentioned a few notes ago and thought it reminded me of Organic Synthesis's little brother, BUT it's not peer reviewed. As a synthetic organic chemist I would not trust this site as much as I would Organic Synthesis, or a procedure gleaned from J. Org. Chem. or any other ACS publication. ACS publications are already searchable on the web, yes I know it cost an annual due but it is there. As for the copyright issue, that is common and the ACS and other publication houses own copyright to all published procedures. As for more general knowledge, there are books published on practical organic chemistry (Larock, March, Carey & Sunberg, Shriner's qual text, etc.). Drying solvents was the first thing I learned to do when I arrived at grad school. As the old saying goes, '40 hours in the lab will save you an hour in the library'.

Dr. Kiessling Department of Chemistry Mansfield University 570-662-4546 akiessli$##$mansfield.edu http://faculty.mansfield.edu/akiessli/ -----Original Message----- From: everybody-bounces$##$orglist.net [mailto:everybody-bounces$##$orglist.net] On Behalf Of Eugen Leitl Sent: Tuesday, February 21, 2006 2:08 PM To: everybody$##$orglist.net Subject: Re: ORGLIST: Synthetic Methods Wiki

On Tue, Feb 21, 2006 at 07:54:57PM +0100, Jonas Sundberg wrote:

> Yes, that looks like a big problem.

I wonder what the motivation behind this restrictive copyright was. Do the operators of http://www.syntheticpages.org/ (I kept looking for a contact address, but was unable to find any) eventually intend to raise a profit from operating it?

> But I think it will be hard to get traffic/active writers, as there seem > to be a lack of organic chemists that surf the web. Still I think it's

> worth a try! It doesn't cost anything else than the time wasted setting > it up, and it could both be fun and educative. But I think we need more > than a wiki of organic synthesis. A think a general wiki about organic

> chemistry with a special section dedicated to preparatory methods would > work better, and maybe run a forum too.

I'm a chemist by training, currently work in cheminformatics, and have several machines in the rack by way of hobby. Assuming people here would contribute content, we can easily cook up something useful, and then see where it goes from there. There's plenty of such projects in biological sciences (e.g. http://openwetware.org/wiki/Main_Page etc.), but I always considered organic chemists to be a too conservative bunch.

Is there at all an interest here in such a project?

> /Jonas > > Eugen Leitl wrote: > > >On Mon, Feb 20, 2006 at 06:46:45PM +0000, will jones wrote: > > > > > > > >>I've tried using that site before and also found it a bit thin. If you > >> > >> > > > >I see bigger problems here: http://www.syntheticpages.org/static/terms.php > > > >Copyright > > > > * SyntheticPages owns the copyright and any other rights to all > > materials on this website > > * SyntheticPages authorises you to: > > o browse and download the material > > o print out the material for teaching or research activities, > > provided that the copyright notice is included (Copyright > > SyntheticPages (c) ) > > * You are not authorised to: > > o alter the material in any way > > o reproduce or store any part of this web site in any other > > public or private storage medium, electronic or otherwise, > > without written permission from SyntheticPages. > > > > > > > > > >>could make the submission process easy, and somehow have the ability to > >>search by structure, then I guess you would be onto a winner. > >> > >> > > > >These are GIFs, so in order to be able to search the images would > >have to be reentered manually, and exported into a suitable format > >(SMILEs, InChI, SDF, etc.) for searching (in a pinch, obgrep would do). > > > > > > > >>If you could also put in a 'section of failed reactions, but should have > >>worked' then that would be awesome. > >> > >> > > > > > > > > _______________________________________________ > ORGLIST - Organic Chemistry Mailing List > Website / Archive / FAQ: http://www.orglist.net > To post a message (TO EVERYBODY) send to everybody$##$orglist.net > To unsubscribe, send to everybody-request$##$orglist.net the message: > unsubscribe your_orglist_password your_address -- Eugen* Leitl leitl http://leitl.org ______________________________________________________________ ICBM: 48.07100, 11.36820 http://www.ativel.com 8B29F6BE: 099D 78BA 2FD3 B014 B08A 7779 75B0 2443 8B29 F6BE _______________________________________________ ORGLIST - Organic Chemistry Mailing List Website / Archive / FAQ: http://www.orglist.net To post a message (TO EVERYBODY) send to everybody$##$orglist.net To unsubscribe, send to everybody-request$##$orglist.net the message: unsubscribe your_orglist_password your_address _______________________________________________ ORGLIST - Organic Chemistry Mailing List Website / Archive / FAQ: http://www.orglist.net To post a message (TO EVERYBODY) send to everybody$##$orglist.net To unsubscribe, send to everybody-request$##$orglist.net the message: unsubscribe your_orglist_password your_address

------------------------------

Message: 6 Date: Wed, 22 Feb 2006 11:22:28 +0000 From: nigel$##$pierpoint.u-net.com Subject: Re: ORGLIST: Synthetic Methods Wiki To: Eugen Leitl <eugen$##$leitl.org> Cc: everybody$##$orglist.net Message-ID: <E1FBs4j-0004HC-Qt$##$he107war.uk.vianw.net> Content-Type: text/plain; format=flowed; charset="iso-8859-1"

As a purely UK web based operation (http://www.syntheticpages.org/static/pwstatement.html) its not unreasonable to expect communication to be performed via email, hence

editor$##$syntheticpages.org.

would be the obvious place to contact them.

Maybe someone should forward these comments onto the editors and see if there is a response.

I don't really think it is a huge problem with copyright. Don't you reference other authors when you use their work/ideas in your own research especially when writing papers?

Also when references the site it helps publicise it which would advertise it to a larger audience and possibly increase the number of submissions.

As to accessing books and journals to glean information about procedures, how many of you have been performing a reaction done countless times in the lab before but by someone else and you can't get it to work? You're following the prep word by word but still can't recreate the ideal conditions that ensures 100 % yield!

Only when you ask that person do they say (Oh actually I found that........does the trick). This information is not included in the original prep, nor written up else where.

Its this "trivial" information that Syntheticpages tries to fill and remember it FREE!!!

Cheers

Nigel

Eugen Leitl writes:

> On Tue, Feb 21, 2006 at 07:54:57PM +0100, Jonas Sundberg wrote: > >> Yes, that looks like a big problem. > > I wonder what the motivation behind this restrictive copyright > was. Do the operators of http://www.syntheticpages.org/ (I kept > looking for a contact address, but was unable to find any) eventually > intend to raise a profit from operating it? > >> But I think it will be hard to get traffic/active writers, as there seem >> to be a lack of organic chemists that surf the web. Still I think it's >> worth a try! It doesn't cost anything else than the time wasted setting >> it up, and it could both be fun and educative. But I think we need more >> than a wiki of organic synthesis. A think a general wiki about organic >> chemistry with a special section dedicated to preparatory methods would >> work better, and maybe run a forum too. > > I'm a chemist by training, currently work in cheminformatics, and > have several machines in the rack by way of hobby. Assuming people here > would contribute content, we can easily cook up something useful, and then see > where it goes from there. There's plenty of such projects in biological > sciences (e.g. http://openwetware.org/wiki/Main_Page etc.), but I always > considered organic chemists to be a too conservative bunch. > > Is there at all an interest here in such a project? > >> /Jonas >> >> Eugen Leitl wrote: >> >> >On Mon, Feb 20, 2006 at 06:46:45PM +0000, will jones wrote: >> > >> > >> > >> >>I've tried using that site before and also found it a bit thin. If you >> >> >> >> >> > >> >I see bigger problems here: http://www.syntheticpages.org/static/terms.php >> > >> >Copyright >> > >> > * SyntheticPages owns the copyright and any other rights to all >> > materials on this website >> > * SyntheticPages authorises you to: >> > o browse and download the material >> > o print out the material for teaching or research activities, >> > provided that the copyright notice is included (Copyright >> > SyntheticPages ) ) >> > * You are not authorised to: >> > o alter the material in any way >> > o reproduce or store any part of this web site in any other >> > public or private storage medium, electronic or otherwise, >> > without written permission from SyntheticPages. >> > >> > >> > >> > >> >>could make the submission process easy, and somehow have the ability to >> >>search by structure, then I guess you would be onto a winner. >> >> >> >> >> > >> >These are GIFs, so in order to be able to search the images would >> >have to be reentered manually, and exported into a suitable format >> >(SMILEs, InChI, SDF, etc.) for searching (in a pinch, obgrep would do). >> > >> > >> > >> >>If you could also put in a 'section of failed reactions, but should have >> >>worked' then that would be awesome. >> >> >> >> >> > >> > >> > >> >> _______________________________________________ >> ORGLIST - Organic Chemistry Mailing List >> Website / Archive / FAQ: http://www.orglist.net >> To post a message (TO EVERYBODY) send to everybody$##$orglist.net >> To unsubscribe, send to everybody-request$##$orglist.net the message: >> unsubscribe your_orglist_password your_address > -- > Eugen* Leitl leitl http://leitl.org > ______________________________________________________________ > ICBM: 48.07100, 11.36820 http://www.ativel.com > 8B29F6BE: 099D 78BA 2FD3 B014 B08A 7779 75B0 2443 8B29 F6BE > _______________________________________________ > ORGLIST - Organic Chemistry Mailing List > Website / Archive / FAQ: http://www.orglist.net > To post a message (TO EVERYBODY) send to everybody$##$orglist.net > To unsubscribe, send to everybody-request$##$orglist.net the message: unsubscribe your_orglist_password your_address

------------------------------

Message: 7 Date: Wed, 22 Feb 2006 15:43:36 -0000 From: "Clyde Davies" <deadlyvices$##$hotmail.com> Subject: RE: ORGLIST: Synthetic Methods Wiki To: <nigel$##$pierpoint.u-net.com>, "'Eugen Leitl'" <eugen$##$leitl.org> Cc: everybody$##$orglist.net Message-ID: <BAY107-DAV1203BA947C295182C1454FB4FD0$##$phx.gbl> Content-Type: text/plain; charset="us-ascii"

I have to say that I find the notion that copyright of a chemical procedure that is to say that it is impossible to reproduce the same procedure word -for-word in another format - residing totally with the publisher to be absolutely preposterous.

I think the problem with Synthetic Pages is that it is taking 20th century notions of scientific publishing and trying to apply them to a very 21st century medium - the Internet. Peer-review existed back in the days of the printed page to ensure that the quality of the material being published was sufficient before committing it to the expensive process of printing. Now, with a wiki, if something proves to be wrong we can retrospectively correct it. My only concern is to do with *safety* issues: advocating the sloshing-about of trichloromethyl chloroformate without pointing out that it generates phosgene vapour, for example would be very irresponsible.

So I think that the reason why Synthetic Pages is as thin as it is, is simply because the process does not 'leverage' the inherently flexible and dynamic nature of the medium. There is still a submissions procedure, peer review, predefined (and rigid) format etc etc...none of which makes the slightest acknowledgement that there are new and better ways of doing things now.

>>From the (largely positive) feedback I have received here I will be progressing with this project. A number of people have already pledged their support (you know who you are) and I will be contacting them shortly to see how we take this idea forward, resources permitting.

Dr Clyde Davies

-----Original Message----- From: everybody-bounces$##$orglist.net [mailto:everybody-bounces$##$orglist.net] On Behalf Of nigel$##$pierpoint.u-net.com Sent: 22 February 2006 11:22 To: Eugen Leitl Cc: everybody$##$orglist.net Subject: Re: ORGLIST: Synthetic Methods Wiki

As a purely UK web based operation (http://www.syntheticpages.org/static/pwstatement.html) its not unreasonable to expect communication to be performed via email, hence

editor$##$syntheticpages.org.

would be the obvious place to contact them.

Maybe someone should forward these comments onto the editors and see if there is a response.

I don't really think it is a huge problem with copyright. Don't you reference other authors when you use their work/ideas in your own research especially when writing papers?

Also when references the site it helps publicise it which would advertise it

to a larger audience and possibly increase the number of submissions.

As to accessing books and journals to glean information about procedures, how many of you have been performing a reaction done countless times in the lab before but by someone else and you can't get it to work? You're following the prep word by word but still can't recreate the ideal conditions that ensures 100 % yield!

Only when you ask that person do they say (Oh actually I found that........does the trick). This information is not included in the original prep, nor written up else where.

Its this "trivial" information that Syntheticpages tries to fill and remember it FREE!!!

Cheers

Nigel

Eugen Leitl writes:

> On Tue, Feb 21, 2006 at 07:54:57PM +0100, Jonas Sundberg wrote: > >> Yes, that looks like a big problem. > > I wonder what the motivation behind this restrictive copyright > was. Do the operators of http://www.syntheticpages.org/ (I kept > looking for a contact address, but was unable to find any) eventually > intend to raise a profit from operating it? > >> But I think it will be hard to get traffic/active writers, as there seem >> to be a lack of organic chemists that surf the web. Still I think it's >> worth a try! It doesn't cost anything else than the time wasted setting >> it up, and it could both be fun and educative. But I think we need more >> than a wiki of organic synthesis. A think a general wiki about organic >> chemistry with a special section dedicated to preparatory methods would >> work better, and maybe run a forum too. > > I'm a chemist by training, currently work in cheminformatics, and > have several machines in the rack by way of hobby. Assuming people here > would contribute content, we can easily cook up something useful, and then see > where it goes from there. There's plenty of such projects in biological > sciences (e.g. http://openwetware.org/wiki/Main_Page etc.), but I always > considered organic chemists to be a too conservative bunch. > > Is there at all an interest here in such a project? > >> /Jonas >> >> Eugen Leitl wrote: >> >> >On Mon, Feb 20, 2006 at 06:46:45PM +0000, will jones wrote: >> > >> > >> > >> >>I've tried using that site before and also found it a bit thin. If you >> >> >> >> >> > >> >I see bigger problems here: http://www.syntheticpages.org/static/terms.php >> > >> >Copyright >> > >> > * SyntheticPages owns the copyright and any other rights to all >> > materials on this website >> > * SyntheticPages authorises you to: >> > o browse and download the material >> > o print out the material for teaching or research activities, >> > provided that the copyright notice is included (Copyright >> > SyntheticPages C ) >> > * You are not authorised to: >> > o alter the material in any way >> > o reproduce or store any part of this web site in any other >> > public or private storage medium, electronic or otherwise, >> > without written permission from SyntheticPages. >> > >> > >> > >> > >> >>could make the submission process easy, and somehow have the ability to

>> >>search by structure, then I guess you would be onto a winner. >> >> >> >> >> > >> >These are GIFs, so in order to be able to search the images would >> >have to be reentered manually, and exported into a suitable format >> >(SMILEs, InChI, SDF, etc.) for searching (in a pinch, obgrep would do). >> > >> > >> > >> >>If you could also put in a 'section of failed reactions, but should have >> >>worked' then that would be awesome. >> >> >> >> >> > >> > >> > >> >> _______________________________________________ >> ORGLIST - Organic Chemistry Mailing List >> Website / Archive / FAQ: http://www.orglist.net >> To post a message (TO EVERYBODY) send to everybody$##$orglist.net >> To unsubscribe, send to everybody-request$##$orglist.net the message: >> unsubscribe your_orglist_password your_address > -- > Eugen* Leitl leitl http://leitl.org > ______________________________________________________________ > ICBM: 48.07100, 11.36820 http://www.ativel.com > 8B29F6BE: 099D 78BA 2FD3 B014 B08A 7779 75B0 2443 8B29 F6BE > _______________________________________________ > ORGLIST - Organic Chemistry Mailing List > Website / Archive / FAQ: http://www.orglist.net > To post a message (TO EVERYBODY) send to everybody$##$orglist.net > To unsubscribe, send to everybody-request$##$orglist.net the message: unsubscribe your_orglist_password your_address

_______________________________________________ ORGLIST - Organic Chemistry Mailing List Website / Archive / FAQ: http://www.orglist.net To post a message (TO EVERYBODY) send to everybody$##$orglist.net To unsubscribe, send to everybody-request$##$orglist.net the message: unsubscribe your_orglist_password your_address

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Message: 8 Date: Wed, 22 Feb 2006 10:45:06 -0500 From: "Robert J. Panetta" <rj_panet$##$alcor.concordia.ca> Subject: ORGLIST: Is methylation in water possible? To: everybody$##$orglist.net Message-ID: <1140623106.43fc8702e6627$##$alcor.concordia.ca> Content-Type: text/plain; charset=ISO-8859-1

Hi all, I'm interested in methylating a suite of carboxylic acids (ranging from acetic to mellitic), which are initially dissolved in water. Just to make life easier and eliminate a few steps in my procedures, I was wondering if anyone here knows of a methylation (or any alkylation reagent) which is not water sensitive. Is such a reagent even a possibility? Thanks, Robert

-- Robert J. Panetta Dept. Chemistry and Biochemistry Concordia University rj_panet$##$alcor.concordia.ca (514)848-2424 ext. 7972

------------------------------

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End of Everybody Digest, Vol 18, Issue 14 *****************************************

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